Presented without much commentary since I stopped once {ggrepel} and {graphlayouts} failed (RStudio doesn’t support it yet, either, which I knew).
The following steps will get you a fully working and STUPID FAST fully native ARM64 M1/Apple Silicon R setup with {tidyverse} and {rJava}.
Just remember, that if you need RStudio (or anything that links against the x86_64 R dylib) you’re going to be reverting this to get stuff done.
# Setting up ARM64 R on Apple Silicon/M1
# I'd run each section by hand, but feel free to live dangerously
# save off what you have installed in homebrew
brew list > ~/Documents/currently-installed-homebrew-formulas.txt
# uninstall x86_64 homebrew
# NOTE that in theory x86_64 and arm64 homebrew can live happily together but
# I went cheap on the SSD in the M1 Mini and wld like the space back
/bin/bash -c "$(curl -fsSL https://raw.githubusercontent.com/Homebrew/install/master/uninstall.sh)"
# make sure you unalias "brew" if you aliased it with "arch"
# need to do this in whatever shell startup script(s) you use, too
unalias brew
# install arm64 homebrew
/bin/bash -c "$(curl -fsSL https://raw.githubusercontent.com/Homebrew/install/master/install.sh)"
# do what it says re: paths
# install wget (to make sure stuff is working)
brew install wget
# place for r-libs; ty R Core & Prof Ripley!
mkdir ~/Downloads/libs-arm64/
# go there
cd ~/Downloads/libs-arm64
# grab'em from https://mac.r-project.org/libs-arm64/
for dl in $(curl -sS "https://mac.r-project.org/libs-arm64/" \
| xmllint --html --xpath '//td/a[contains(@href, 'tar.gz')]/@href' 2>/dev/null - \
| sed -e 's/ href="//g' -e 's/"/\n/g'); do wget "https://mac.r-project.org/libs-arm64/${dl}" ; done
# prime sudo (not rly necessary but I dislike having to enter sudo passwords in a for loop)
sudo ls ~/Downloads/libs-arm64
# extract'em
for gz in $(ls ~/Downloads/libs-arm64/*gz); do
sudo tar fvxz ${gz} -C /
done
# grab r-devel
cd ~/Downloads
wget https://mac.r-project.org/big-sur/R-devel/arm64/R-devel.tar.gz
# extract it
tar fvxz R*.tar.gz -C /
# install libxml2 and more (to prime libraries)
brew install libxml2 ccache libgit2 unixodbc poppler coreutils
# review ~/Documents/currently-installed-homebrew-formulas.txt and add what you need from there
# put this in your shell startup (macOS folks shld get used to zsh, so ~/.zshrc is a good place to stick it at the end)
export PATH=/opt/R/arm64/bin:$PATH
# and also run it at the command prompt
export PATH=/opt/R/arm64/bin:$PATH
# go for broke!
Rscript -e "install.packages('tidyverse')"
# throw caution to the wind!
Rscript -e "install.packages('devtools')"
# shoot for the moon!
Rscript -e "install.packages(c('DBI', 'odbc'))"
# it's crazytown
Rscript -e "install.packages('ggraph')"
# ARGH! {ggrepel} and {graphlayouts} fail (RStudio won't work anyway so this whole thing was just an exercise)
# setup java; open and run the pkg installer; they have a tar.gz as well
wget https://cdn.azul.com/zulu/bin/zulu11.45.27-ca-jdk11.0.10-macosx_aarch64.dmg
# tell R about it
R CMD javareconf
# setup JAVA_HOME like you would in your shell
# this is necessary as the Java framework is gone from macOS in Big Sur
Rscript -e 'install.packages("rJava",,"http://rforge.net")'
##################################
# TO ***UNDO*** ALL OF THE ABOVE #
##################################
# uninstall amd64 homebrew
# NOTE that in theory x86_64 and arm64 homebrew can live happily together but
# I went cheap on the SSD in the M1 Mini and wld like the space back
/bin/bash -c "$(curl -fsSL https://raw.githubusercontent.com/Homebrew/install/master/uninstall.sh)"
# make sure you re-alias "brew"
# need to do this in whatever shell startup script(s) you use, too
alias brew='arch --x86_64 brew'
# install x86_64 homebrew
/bin/bash -c "$(curl -fsSL https://raw.githubusercontent.com/Homebrew/install/master/install.sh)"
# install libxml2 and more (to prime libraries)
brew install libxml2 ccache libgit2 unixodbc poppler coreutils
# review ~/Documents/currently-installed-homebrew-formulas.txt and add what you need from there
# remove the following from your shell startup script(s)
export PATH=/opt/R/arm64/bin:$PATH
# re-setup java for x86_64; open and run the pkg installer; they have a tar.gz as well
wget "https://cdn.azul.com/zulu/bin/zulu11.45.27-ca-jdk11.0.10-macosx_x64.dmg"
# re-do the parts of the rest of the setup that you need to
Until CRAN has {sf} binaries, use this recipe to build it from source.
5 Comments
A somewhat related question. Did you by any chance ever manage to get OpenMP working in R with the m1?
Is there any way of having both setups available at the same time? From the way you have presented it, I am guessing not
That’s on the TODO for this weekend (tis a 3-day wknd in the U.S.). I think I can get it to work.
Thanks so much for this. I threw caution to the wind and tried to install ‘devtools’ but that is failing with the installation of package
processx
. Any thoughts about how I can overcome this?installing source package ‘processx’ …
** package ‘processx’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
/opt/homebrew/opt/llvm/bin/clang -fopenmp -g -O3 -Wall -pedantic -std=gnu99 -mtune=native -pipe -Wall tools/px.c -o tools/px
ld: library not found for -lomp
clang-11: error: linker command failed with exit code 1 (use -v to see invocation)
make: *** [tools/px] Error 1
ERROR: compilation failed for package ‘processx’
Ah, yeah, anything with
openmp
is going to be a trip into Hades on macOS since Apple refuses to provide native support for it.I’m running 4.1.x (r-devel) on my M1 Mini since it’s a native M1 build of R. CRAN managed to get it to compile since there’s a
processx
R 4.1.x binary here: https://cran.r-project.org/bin/macosx/big-sur-arm64/contrib/4.1Give this — https://mac.r-project.org/openmp/ — a go and I’ll see if I can use RSwitch to try this on R 4.0.x later this weekend.
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