{"id":9376,"date":"2018-04-01T11:08:31","date_gmt":"2018-04-01T16:08:31","guid":{"rendered":"https:\/\/rud.is\/b\/?p=9376"},"modified":"2018-04-01T11:08:31","modified_gmt":"2018-04-01T16:08:31","slug":"compute-visualize-drive-space-consumption-of-your-installed-r-packages","status":"publish","type":"post","link":"https:\/\/rud.is\/b\/2018\/04\/01\/compute-visualize-drive-space-consumption-of-your-installed-r-packages\/","title":{"rendered":"Compute\/Visualize Drive Space Consumption of Your Installed R Packages"},"content":{"rendered":"<p>The <code>fs<\/code> package makes it super quick and easy to find out just how much &#8220;package hoarding&#8221; you&#8217;ve been doing:<\/p>\n<pre id=\"cdscip01\"><code class=\"language-r\">library(fs)\nlibrary(ggalt) # devtools::install_github(&quot;hrbrmstr\/ggalt&quot;)\nlibrary(igraph) \nlibrary(ggraph) # devtools::install_github(&quot;thomasp85\/ggraph&quot;)\nlibrary(hrbrthemes) # devtools::install_github(&quot;hrbrmstr\/hrbrthemes&quot;)\nlibrary(tidyverse)\n\ninstalled.packages() %&gt;%\n  as_data_frame() %&gt;%\n  mutate(pkg_dir = sprintf(&quot;%s\/%s&quot;, LibPath, Package)) %&gt;%\n  select(pkg_dir) %&gt;%\n  mutate(pkg_dir_size = map_dbl(pkg_dir, ~{\n    fs::dir_info(.x, all=TRUE, recursive=TRUE) %&gt;%\n      summarise(tot_dir_size = sum(size)) %&gt;% \n      pull(tot_dir_size)\n  })) %&gt;% \n  summarise(\n    total_size_of_all_installed_packages=ggalt::Gb(sum(pkg_dir_size))\n  ) %&gt;% \n  unlist()\n## total_size_of_all_installed_packages \n##                             &quot;1.6 Gb&quot;<\/code><\/pre>\n<p>While you can modify the above and peruse the list of packages\/directories in tabular format or programmatically, you can also do a bit more work to get a visual overview of package size (click\/tap the image for a larger view):<\/p>\n<pre id=\"cdscip02\"><code class=\"language-r\">installed.packages() %&gt;%\r\n  as_data_frame() %&gt;%\r\n  mutate(pkg_dir = sprintf(&quot;%s\/%s&quot;, LibPath, Package)) %&gt;%\r\n  mutate(dir_info = map(pkg_dir, fs::dir_info, all=TRUE, recursive=TRUE)) %&gt;% \r\n  mutate(dir_size = map_dbl(dir_info, ~sum(.x$size))) -&gt; xdf\r\n\r\nselect(xdf, Package, dir_size) %&gt;% \r\n  mutate(grp = &quot;ROOT&quot;) %&gt;% \r\n  add_row(grp = &quot;ROOT&quot;, Package=&quot;ROOT&quot;, dir_size=0) %&gt;% \r\n  select(grp, Package, dir_size) %&gt;% \r\n  arrange(desc(dir_size)) -&gt; gdf\r\n\r\nselect(gdf, -grp) %&gt;% \r\n  mutate(lab = sprintf(&quot;%s\\n(%s)&quot;, Package, ggalt::Mb(dir_size))) %&gt;% \r\n  mutate(lab = ifelse(dir_size &gt; 1500000, lab, &quot;&quot;)) -&gt; vdf\r\n\r\ng &lt;- graph_from_data_frame(gdf, vertices=vdf)\r\n\r\nggraph(g, &quot;treemap&quot;, weight=dir_size) +\r\n  geom_node_tile(fill=&quot;lightslategray&quot;, size=0.25) +\r\n  geom_text(\r\n    aes(x, y, label=lab, size=dir_size), \r\n    color=&quot;#cccccc&quot;, family=font_ps, lineheight=0.875\r\n  ) +\r\n  scale_x_reverse(expand=c(0,0)) +\r\n  scale_y_continuous(expand=c(0,0)) +\r\n  scale_size_continuous(trans=&quot;sqrt&quot;, range = c(0.5, 8)) +\r\n  ggraph::theme_graph(base_family = font_ps) +\r\n  theme(legend.position=&quot;none&quot;)<\/code><\/pre>\n<p><a href=\"https:\/\/i0.wp.com\/rud.is\/b\/wp-content\/uploads\/2018\/04\/plot_zoom_png.png?ssl=1\"><img data-recalc-dims=\"1\" loading=\"lazy\" decoding=\"async\" data-attachment-id=\"9377\" data-permalink=\"https:\/\/rud.is\/b\/2018\/04\/01\/compute-visualize-drive-space-consumption-of-your-installed-r-packages\/plot_zoom_png-11\/\" data-orig-file=\"https:\/\/i0.wp.com\/rud.is\/b\/wp-content\/uploads\/2018\/04\/plot_zoom_png.png?fit=2874%2C1740&amp;ssl=1\" data-orig-size=\"2874,1740\" data-comments-opened=\"1\" data-image-meta=\"{&quot;aperture&quot;:&quot;0&quot;,&quot;credit&quot;:&quot;&quot;,&quot;camera&quot;:&quot;&quot;,&quot;caption&quot;:&quot;&quot;,&quot;created_timestamp&quot;:&quot;0&quot;,&quot;copyright&quot;:&quot;&quot;,&quot;focal_length&quot;:&quot;0&quot;,&quot;iso&quot;:&quot;0&quot;,&quot;shutter_speed&quot;:&quot;0&quot;,&quot;title&quot;:&quot;&quot;,&quot;orientation&quot;:&quot;0&quot;}\" data-image-title=\"treemap of package disk consumption\" data-image-description=\"&lt;p&gt;treemap of package disk consumption&lt;\/p&gt;\n\" data-image-caption=\"\" data-large-file=\"https:\/\/i0.wp.com\/rud.is\/b\/wp-content\/uploads\/2018\/04\/plot_zoom_png.png?fit=510%2C309&amp;ssl=1\" src=\"https:\/\/i0.wp.com\/rud.is\/b\/wp-content\/uploads\/2018\/04\/plot_zoom_png.png?resize=510%2C309&#038;ssl=1\" alt=\"treemap of package disk consumption\" width=\"510\" height=\"309\" class=\"aligncenter size-full wp-image-9377\" \/><\/a><\/p>\n<h3>Challenge<\/h3>\n<p>Do some wrangling with the above data and turn it into a package &#8220;disk explorer&#8221; with @timelyportfolio&#8217;s <a href=\"https:\/\/github.com\/timelyportfolio\/d3treeR\"><code>d3treeR<\/code>?<\/a> package.<\/p>\n","protected":false},"excerpt":{"rendered":"<p>The fs package makes it super quick and easy to find out just how much &#8220;package hoarding&#8221; you&#8217;ve been doing: While you can modify the above and peruse the list of packages\/directories in tabular format or programmatically, you can also do a bit more work to get a visual overview of package size (click\/tap the [&hellip;]<\/p>\n","protected":false},"author":1,"featured_media":9377,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"jetpack_post_was_ever_published":false,"_jetpack_newsletter_access":"","_jetpack_dont_email_post_to_subs":false,"_jetpack_newsletter_tier_id":0,"_jetpack_memberships_contains_paywalled_content":false,"_jetpack_memberships_contains_paid_content":false,"activitypub_content_warning":"","activitypub_content_visibility":"","activitypub_max_image_attachments":3,"activitypub_interaction_policy_quote":"anyone","activitypub_status":"","footnotes":""},"categories":[91],"tags":[],"class_list":["post-9376","post","type-post","status-publish","format-standard","has-post-thumbnail","hentry","category-r"],"yoast_head":"<!-- This site is optimized with the Yoast SEO plugin v27.3 - https:\/\/yoast.com\/product\/yoast-seo-wordpress\/ -->\n<title>Compute\/Visualize Drive Space Consumption of Your Installed R Packages - 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