The `knitr`\/R markdown system is a great way to organize reports and analyses. However, the built-in ones (that come with RStudio\/the `rmarkdown` package) rely on Bootstrap and also use jQuery. There’s nothing wrong with that, but the generated standalone HTML documents (which are a great way to distribute reports) don’t really need all that cruft and it’s fun & informative to check out new frameworks from time-to-time. Also, jQuery is a heavy crutch I’m working hard to not need anymore.<\/p>\n
To that end, I created a package — [`markdowntemplates`](https:\/\/github.com\/hrbrmstr\/markdowntemplates) — that contains three alternate templates that you can use out of the box or (hopefully) clone, customize and use in your future work. One template is based on the [Bulma CSS framework](http:\/\/bulma.io), the other is based on the [Skeleton CSS framework](http:\/\/getskeleton.com) and the last one is a super-minimal template with no formatting (i.e. it’s a good one to build on).<\/p>\n
The github repo has screenshots of the basic formatting. <\/p>\n
I tried to keep with the base formatting of each theme, but I went a bit crazy and showed how to have a fixed banner in the Skeleton version.<\/p>\n
### How it works<\/p>\n
There are three directories inside `inst\/rmarkdown\/templates` each has a similar structure:<\/p>\n
– a `resources` directory with CSS (and potentially javascript)
\n– a `skeleton` directory which holds example `Rmd` “skeleton” files
\n– a `base.html` file which is the parameterized HTML template for the Rmd
\n– a `template.yaml` file which is how RStudio\/`knitr` knows there’s one or more R markdown templates in your package<\/p>\n
The `minimal` `base.html` is small enough to include here:<\/p>\n
\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n$if(title)$$title$$endif$<\/title>\r\n\r\n$for(header-includes)$\r\n$header-includes$\r\n$endfor$\r\n\r\n$if(highlightjs)$\r\n<style type=\"text\/css\">code{white-space: pre;}<\/style>\r\n<link rel=\"stylesheet\"\r\n href=\"$highlightjs$\/$if(highlightjs-theme)$$highlightjs-theme$$else$default$endif$.css\"\r\n $if(html5)$$else$type=\"text\/css\" $endif$\/>\r\n<script src=\"$highlightjs$\/highlight.js\"><\/script>\r\n<script type=\"text\/javascript\">\r\nif (window.hljs && document.readyState && document.readyState === \"complete\") {\r\n window.setTimeout(function() {\r\n hljs.initHighlighting();\r\n }, 0);\r\n}\r\n<\/script>\r\n$endif$\r\n\r\n$if(highlighting-css)$\r\n<style type=\"text\/css\">code{white-space: pre;}<\/style>\r\n<style type=\"text\/css\">\r\n$highlighting-css$\r\n<\/style>\r\n$endif$\r\n\r\n$for(css)$\r\n<link rel=\"stylesheet\" href=\"$css$\" $if(html5)$$else$type=\"text\/css\" $endif$\/>\r\n$endfor$\r\n\r\n<\/head>\r\n\r\n<body>\r\n<div class=\"container\">\r\n\r\n<h1>$if(title)$$title$$endif$<\/h1>\r\n\r\n$for(include-before)$\r\n$include-before$\r\n$endfor$\r\n\r\n$if(toc)$\r\n<div id=\"$idprefix$TOC\">\r\n$toc$\r\n<\/div>\r\n$endif$\r\n\r\n$body$\r\n\r\n$for(include-after)$\r\n$include-after$\r\n$endfor$\r\n\r\n<\/div>\r\n\r\n$if(mathjax-url)$\r\n<!-- dynamically load mathjax for compatibility with self-contained -->\r\n<script>\r\n (function () {\r\n var script = document.createElement(\"script\");\r\n script.type = \"text\/javascript\";\r\n script.src = \"$mathjax-url$\";\r\n document.getElementsByTagName(\"head\")[0].appendChild(script);\r\n })();\r\n<\/script>\r\n$endif$\r\n\r\n<\/body>\r\n<\/html><\/pre>\n<p>I kept a bit of the RStudio template code for source code formatting, but grokking the actual template language should be pretty straightforward. You should be able to pick out `$title$` in there and you can add as many parameters to the `Rmd` YAML section as you like (with corresponding counterparts in that template). I added a corresponding, exported R function for each supported template to show how easy it is to customize the parameters while also accepting further customizations in the YAML of each `Rmd`.<\/p>\n<p>Imagine building a base template with your personal or organization’s branding *and* having it set apart from the cookie-cutter RStudio `rmarkdown` Bootstrap\/jQuery template. Or, create course-specific templates like the [`s20x` package](https:\/\/github.com\/cran\/s20x). Once you peek behind the curtain to see how things are done, it’s not so complex and the sky is the limit.<\/p>\n<p>I’ll try to get these in CRAN as soon as possible. If you have a preference for another CSS framework (I’m thinking of adding a “Metro” CSS kit and a Google web starter CSS kit), shoot me an issue or PR and I’ll incorporate it. The more examples we have the easier it will be for folks to create new templates.<\/p>\n<p>Any & all feedback is most welcome.<\/p>\n","protected":false},"excerpt":{"rendered":"<p>The `knitr`\/R markdown system is a great way to organize reports and analyses. However, the built-in ones (that come with RStudio\/the `rmarkdown` package) rely on Bootstrap and also use jQuery. There’s nothing wrong with that, but the generated standalone HTML documents (which are a great way to distribute reports) don’t really need all that cruft […]<\/p>\n","protected":false},"author":1,"featured_media":0,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"jetpack_post_was_ever_published":false,"_jetpack_newsletter_access":"","_jetpack_dont_email_post_to_subs":false,"_jetpack_newsletter_tier_id":0,"_jetpack_memberships_contains_paywalled_content":false,"_jetpack_memberships_contains_paid_content":false,"activitypub_content_warning":"","activitypub_content_visibility":"","activitypub_max_image_attachments":3,"activitypub_interaction_policy_quote":"anyone","activitypub_status":"","footnotes":""},"categories":[91],"tags":[810],"class_list":["post-3914","post","type-post","status-publish","format-standard","hentry","category-r","tag-post"],"yoast_head":"<!-- This site is optimized with the Yoast SEO plugin v27.3 - https:\/\/yoast.com\/product\/yoast-seo-wordpress\/ -->\n<title>Alternate R Markdown Templates - rud.is<\/title>\n<meta name=\"robots\" content=\"index, follow, max-snippet:-1, max-image-preview:large, max-video-preview:-1\" \/>\n<link rel=\"canonical\" href=\"https:\/\/rud.is\/b\/2016\/02\/04\/alternate-r-markdown-templates\/\" \/>\n<meta property=\"og:locale\" content=\"en_US\" \/>\n<meta property=\"og:type\" content=\"article\" \/>\n<meta property=\"og:title\" content=\"Alternate R Markdown Templates - rud.is\" \/>\n<meta property=\"og:description\" content=\"The `knitr`\/R markdown system is a great way to organize reports and analyses. 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I'm waiting for all the repos to import into to other services and haven't had\u2026","rel":"","context":"In "R"","block_context":{"text":"R","link":"https:\/\/rud.is\/b\/category\/r\/"},"img":{"alt_text":"","src":"https:\/\/i0.wp.com\/rud.is\/b\/wp-content\/uploads\/2018\/06\/dorling.png?fit=1200%2C800&ssl=1&resize=350%2C200","width":350,"height":200,"srcset":"https:\/\/i0.wp.com\/rud.is\/b\/wp-content\/uploads\/2018\/06\/dorling.png?fit=1200%2C800&ssl=1&resize=350%2C200 1x, https:\/\/i0.wp.com\/rud.is\/b\/wp-content\/uploads\/2018\/06\/dorling.png?fit=1200%2C800&ssl=1&resize=525%2C300 1.5x, https:\/\/i0.wp.com\/rud.is\/b\/wp-content\/uploads\/2018\/06\/dorling.png?fit=1200%2C800&ssl=1&resize=700%2C400 2x, https:\/\/i0.wp.com\/rud.is\/b\/wp-content\/uploads\/2018\/06\/dorling.png?fit=1200%2C800&ssl=1&resize=1050%2C600 3x"},"classes":[]},{"id":11812,"url":"https:\/\/rud.is\/b\/2019\/01\/24\/quick-hit-automating-production-graphics-uploads-in-r-markdown-documents-with-googledrive\/","url_meta":{"origin":3914,"position":1},"title":"Quick Hit: Automating Production Graphics Uploads in R Markdown Documents with googledrive","author":"hrbrmstr","date":"2019-01-24","format":false,"excerpt":"As someone who measures all kinds of things on the internet as part of his $DAYJOB, I can say with some authority that huge swaths of organizations are using cloud-services such as Google Apps, Dropbox and Office 365 as part of their business process workflows. For me, one regular component\u2026","rel":"","context":"In "R"","block_context":{"text":"R","link":"https:\/\/rud.is\/b\/category\/r\/"},"img":{"alt_text":"","src":"","width":0,"height":0},"classes":[]},{"id":4867,"url":"https:\/\/rud.is\/b\/2017\/01\/10\/knit-directly-to-jupyter-notebooks-from-rstudio\/","url_meta":{"origin":3914,"position":2},"title":"Knit directly to jupyter notebooks from RStudio","author":"hrbrmstr","date":"2017-01-10","format":false,"excerpt":"Did you know that you can completely replace the \"knitting\" engine in R Markdown documents? Well, you can! Why would you want to do this? Well, in the case of this post, to commit the unpardonable sin of creating a clunky jupyter notebook from a pristine Rmd file. I'm definitely\u2026","rel":"","context":"In "Python"","block_context":{"text":"Python","link":"https:\/\/rud.is\/b\/category\/python-2\/"},"img":{"alt_text":"","src":"","width":0,"height":0},"classes":[]},{"id":5854,"url":"https:\/\/rud.is\/b\/2017\/04\/30\/r%e2%81%b6-using-pandoc-from-r-a-neat-package-for-reading-subtitles\/","url_meta":{"origin":3914,"position":3},"title":"R\u2076 \u2014 Using pandoc from R + A Neat Package For Reading Subtitles","author":"hrbrmstr","date":"2017-04-30","format":false,"excerpt":"Once I realized that my planned, larger post would not come to fruition today I took the R\u2076 post (i.e. \"minimal expository, keen focus\") route, prompted by a Twitter discussion with some R mates who needed to convert \"lightly formatted\" Microsoft Word (docx) documents to markdown. Something like this: to:\u2026","rel":"","context":"In "R"","block_context":{"text":"R","link":"https:\/\/rud.is\/b\/category\/r\/"},"img":{"alt_text":"","src":"https:\/\/i0.wp.com\/rud.is\/b\/wp-content\/uploads\/2017\/04\/flash.png?fit=1200%2C643&ssl=1&resize=350%2C200","width":350,"height":200,"srcset":"https:\/\/i0.wp.com\/rud.is\/b\/wp-content\/uploads\/2017\/04\/flash.png?fit=1200%2C643&ssl=1&resize=350%2C200 1x, https:\/\/i0.wp.com\/rud.is\/b\/wp-content\/uploads\/2017\/04\/flash.png?fit=1200%2C643&ssl=1&resize=525%2C300 1.5x, https:\/\/i0.wp.com\/rud.is\/b\/wp-content\/uploads\/2017\/04\/flash.png?fit=1200%2C643&ssl=1&resize=700%2C400 2x, https:\/\/i0.wp.com\/rud.is\/b\/wp-content\/uploads\/2017\/04\/flash.png?fit=1200%2C643&ssl=1&resize=1050%2C600 3x"},"classes":[]},{"id":12094,"url":"https:\/\/rud.is\/b\/2019\/03\/17\/handling-sharing-pcaps-like-a-boss-with-packettotal\/","url_meta":{"origin":3914,"position":4},"title":"Handling & Sharing PCAPs Like a Boss with PacketTotal","author":"hrbrmstr","date":"2019-03-17","format":false,"excerpt":"The fine folks over at @PacketTotal bequeathed an API token on me so I cranked out an R package for it to enable more dynamic investigations work (RStudio makes for an amazing incident responder investigations console given that you can script in multiple languages, code in C[++], and write documentation\u2026","rel":"","context":"In "Cybersecurity"","block_context":{"text":"Cybersecurity","link":"https:\/\/rud.is\/b\/category\/cybersecurity\/"},"img":{"alt_text":"","src":"","width":0,"height":0},"classes":[]},{"id":11746,"url":"https:\/\/rud.is\/b\/2019\/01\/10\/waffle-geoms-other-miscellaneous-in-development-package-updates\/","url_meta":{"origin":3914,"position":5},"title":"Waffle Geoms & Other Miscellaneous In-Development Package Updates","author":"hrbrmstr","date":"2019-01-10","format":false,"excerpt":"More than just sergeant has been hacked on recently, so here's a run-down of various ? updates: waffle The square pie chart generating waffle? package now contains a nascent geom_waffle() so you can do things like this: library(hrbrthemes) library(waffle) library(tidyverse) tibble( parts = factor(rep(month.abb[1:3], 3), levels=month.abb[1:3]), values = c(10, 20,\u2026","rel":"","context":"In "R"","block_context":{"text":"R","link":"https:\/\/rud.is\/b\/category\/r\/"},"img":{"alt_text":"","src":"https:\/\/i0.wp.com\/rud.is\/b\/wp-content\/uploads\/2019\/01\/fwg.png?fit=900%2C1200&ssl=1&resize=350%2C200","width":350,"height":200,"srcset":"https:\/\/i0.wp.com\/rud.is\/b\/wp-content\/uploads\/2019\/01\/fwg.png?fit=900%2C1200&ssl=1&resize=350%2C200 1x, https:\/\/i0.wp.com\/rud.is\/b\/wp-content\/uploads\/2019\/01\/fwg.png?fit=900%2C1200&ssl=1&resize=525%2C300 1.5x, https:\/\/i0.wp.com\/rud.is\/b\/wp-content\/uploads\/2019\/01\/fwg.png?fit=900%2C1200&ssl=1&resize=700%2C400 2x"},"classes":[]}],"jetpack_sharing_enabled":true,"_links":{"self":[{"href":"https:\/\/rud.is\/b\/wp-json\/wp\/v2\/posts\/3914","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/rud.is\/b\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/rud.is\/b\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/rud.is\/b\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/rud.is\/b\/wp-json\/wp\/v2\/comments?post=3914"}],"version-history":[{"count":0,"href":"https:\/\/rud.is\/b\/wp-json\/wp\/v2\/posts\/3914\/revisions"}],"wp:attachment":[{"href":"https:\/\/rud.is\/b\/wp-json\/wp\/v2\/media?parent=3914"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/rud.is\/b\/wp-json\/wp\/v2\/categories?post=3914"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/rud.is\/b\/wp-json\/wp\/v2\/tags?post=3914"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}