{"id":11812,"date":"2019-01-24T15:03:42","date_gmt":"2019-01-24T20:03:42","guid":{"rendered":"https:\/\/rud.is\/b\/?p=11812"},"modified":"2019-01-25T11:26:53","modified_gmt":"2019-01-25T16:26:53","slug":"quick-hit-automating-production-graphics-uploads-in-r-markdown-documents-with-googledrive","status":"publish","type":"post","link":"https:\/\/rud.is\/b\/2019\/01\/24\/quick-hit-automating-production-graphics-uploads-in-r-markdown-documents-with-googledrive\/","title":{"rendered":"Quick Hit: Automating Production Graphics Uploads in R Markdown Documents with googledrive"},"content":{"rendered":"<p>As someone who measures all kinds of things on the internet as part of his $DAYJOB, I can say with some authority that huge swaths of organizations are using cloud-services such as Google Apps, Dropbox and Office 365  as part of their business process workflows. For me, one regular component that touches the &#8220;cloud&#8221; is when I have to share R-generated charts with our spiffy production team for use in reports, presentations and other general communications.<\/p>\n<p>These are typically project-based tasks and data science team members typically use git- and AWS-based workflows for gathering data, performing analyses and generating output. While git is great at sharing code and ensuring the historical integrity of our analyses, we don&#8217;t expect the production team members to be or become experts in git to use our output. They live in Google Drive and thanks to the <a href=\"https:\/\/googledrive.tidyverse.org\/\"><code>googledrive<\/code>?<\/a> package we can bridge the gap between code and output with just a few lines of R code.<\/p>\n<p>We use &#8220;<a href=\"https:\/\/support.rstudio.com\/hc\/en-us\/articles\/200526207-Using-Projects\">R projects<\/a>&#8221; to organize things and either use <a href=\"https:\/\/deanattali.com\/2015\/03\/24\/knitrs-best-hidden-gem-spin\/\">spinnable<\/a> R scripts or R markdown documents inside those projects to gather, clean and analyze data.<\/p>\n<p>For 2019, we&#8217;re using new, work-specific R markdown templates that have one new YAML header parameter:<\/p>\n<pre><code class=\"language-plain\">params:\n  gdrive_folder_url: \"https:\/\/drive.google.com\/drive\/u\/2\/SOMEUSELESSHEXSTRING\"\n<\/code><\/pre>\n<p>which just defines the Google Drive folder URL for the final output directory in the \u2601\ufe0f.<\/p>\n<p>Next is a new pre-configured <code>knitr<\/code> chunk call at the start of these production chart-generating documents:<\/p>\n<pre><code class=\"language-r\">knitr::opts_chunk$set(\n  message = FALSE,\n  warning = FALSE, dev = c(\"png\", \"cairo_pdf\"),\n  echo = FALSE,\n  fig.retina = 2,\n  fig.width = 10,\n  fig.height = 6,\n  fig.path = \"prod\/charts\/\"\n)\n<\/code><\/pre>\n<p>since the production team wants PDF so they can work with it in their tools. Our testing showed that <code>cairo_pdf<\/code> produces the best\/most consistent output, but PNGs show up better in the composite HTML documents so we use that order deliberately.<\/p>\n<p>The real change is the consistent naming of the <code>fig.path<\/code> directory. By doing this, all we have to do is add a few lines (again, automatically generated) to the bottom of the document to have all the output automagically go to the proper Google Drive folder:<\/p>\n<pre><code class=\"language-r\"># Upload to production ----------------------------------------------------\n\ngoogledrive::drive_auth()\n\n# locate the folder\ngdrive_prod_folder &lt;- googledrive::as_id(params$gdrive_folder_url)\n\n# clean it out\ngdrls &lt;- googledrive::drive_ls(gdrive_prod_folder)\nif (nrow(gdrls) &gt; 0) {\n  dplyr::pull(gdrls, id) %&gt;%\n    purrr::walk(~googledrive::drive_rm(googledrive::as_id(.x)))\n}\n\n# upload new\nlist.files(here::here(\"prod\/charts\"), recursive = TRUE, full.names = TRUE) %&gt;%\n  purrr::walk(googledrive::drive_upload, path = gdrive_prod_folder)\n<\/code><\/pre>\n<p>Now, we never have to remember to drag documents into a browser and don&#8217;t have to load invasive Google applications onto our systems to ensure the right folks have the right files at the right time. We just have to use the new R markdown document type to generate a starter analysis document with all the necessary boilerplate baked in. Plus, <code>.httr-oauth<\/code> file is automatically ignored in <code>.gitignore<\/code> so there&#8217;s no information leakage to shared git repositories.<\/p>\n<h3>FIN<\/h3>\n<p>If you want to experiment with this, you can find a <a href=\"https:\/\/git.sr.ht\/%7Ehrbrmstr\/markdowntemplates\/tree\/master\/inst\/rmarkdown\/templates\/gdriveupload\/skeleton\/skeleton.Rmd\">pre-configured template<\/a> in the <code>markdowntemplates<\/code> package over at <a href=\"https:\/\/git.sr.ht\/~hrbrmstr\/markdowntemplates\">sr.ht<\/a>, <a href=\"https:\/\/gitlab.com\/hrbrmstr\/markdowntemplates\">GitLab<\/a>, or <a href=\"https:\/\/github.com\/hrbrmstr\/markdowntemplates\">GitHub<\/a>.<\/p>\n<p>If you install the package you&#8217;ll be able to select this output type right from the new document dialog:<\/p>\n<p><a href=\"https:\/\/rud.is\/b\/2019\/01\/24\/quick-hit-automating-production-graphics-uploads-in-r-markdown-documents-with-googledrive\/gdrive-auto-upload\/\" rel=\"attachment wp-att-11813\"><img data-recalc-dims=\"1\" loading=\"lazy\" decoding=\"async\" data-attachment-id=\"11813\" data-permalink=\"https:\/\/rud.is\/b\/2019\/01\/24\/quick-hit-automating-production-graphics-uploads-in-r-markdown-documents-with-googledrive\/gdrive-auto-upload\/\" data-orig-file=\"https:\/\/i0.wp.com\/rud.is\/b\/wp-content\/uploads\/2019\/01\/gdrive-auto-upload.png?fit=1066%2C944&amp;ssl=1\" data-orig-size=\"1066,944\" data-comments-opened=\"1\" data-image-meta=\"{&quot;aperture&quot;:&quot;0&quot;,&quot;credit&quot;:&quot;&quot;,&quot;camera&quot;:&quot;&quot;,&quot;caption&quot;:&quot;&quot;,&quot;created_timestamp&quot;:&quot;0&quot;,&quot;copyright&quot;:&quot;&quot;,&quot;focal_length&quot;:&quot;0&quot;,&quot;iso&quot;:&quot;0&quot;,&quot;shutter_speed&quot;:&quot;0&quot;,&quot;title&quot;:&quot;&quot;,&quot;orientation&quot;:&quot;0&quot;}\" data-image-title=\"gdrive-auto-upload\" data-image-description=\"\" data-image-caption=\"\" data-large-file=\"https:\/\/i0.wp.com\/rud.is\/b\/wp-content\/uploads\/2019\/01\/gdrive-auto-upload.png?fit=510%2C452&amp;ssl=1\" src=\"https:\/\/i0.wp.com\/rud.is\/b\/wp-content\/uploads\/2019\/01\/gdrive-auto-upload.png?resize=510%2C452&#038;ssl=1\" alt=\"\" width=\"510\" height=\"452\" class=\"aligncenter size-full wp-image-11813\" \/><\/a><\/p>\n<p>and new template will be ready to go with no copying, cutting or pasting.<\/p>\n<p>Plus, since the Google Drive folder URL is an R markdown parameter, you can also use this in script automation (provided that you&#8217;ve wired up oauth correctly for those scripts).<\/p>\n","protected":false},"excerpt":{"rendered":"<p>As someone who measures all kinds of things on the internet as part of his $DAYJOB, I can say with some authority that huge swaths of organizations are using cloud-services such as Google Apps, Dropbox and Office 365 as part of their business process workflows. For me, one regular component that touches the &#8220;cloud&#8221; is [&hellip;]<\/p>\n","protected":false},"author":1,"featured_media":0,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"jetpack_post_was_ever_published":false,"_jetpack_newsletter_access":"","_jetpack_dont_email_post_to_subs":false,"_jetpack_newsletter_tier_id":0,"_jetpack_memberships_contains_paywalled_content":false,"_jetpack_memberships_contains_paid_content":false,"activitypub_content_warning":"","activitypub_content_visibility":"","activitypub_max_image_attachments":3,"activitypub_interaction_policy_quote":"anyone","activitypub_status":"","footnotes":""},"categories":[91],"tags":[],"class_list":["post-11812","post","type-post","status-publish","format-standard","hentry","category-r"],"yoast_head":"<!-- This site is optimized with the Yoast SEO plugin v27.3 - https:\/\/yoast.com\/product\/yoast-seo-wordpress\/ -->\n<title>Quick Hit: Automating Production Graphics Uploads in R Markdown Documents with googledrive - rud.is<\/title>\n<meta name=\"robots\" content=\"index, follow, max-snippet:-1, max-image-preview:large, max-video-preview:-1\" \/>\n<link rel=\"canonical\" href=\"https:\/\/rud.is\/b\/2019\/01\/24\/quick-hit-automating-production-graphics-uploads-in-r-markdown-documents-with-googledrive\/\" \/>\n<meta property=\"og:locale\" content=\"en_US\" \/>\n<meta property=\"og:type\" content=\"article\" \/>\n<meta property=\"og:title\" content=\"Quick Hit: Automating Production Graphics Uploads in R Markdown Documents with googledrive - rud.is\" \/>\n<meta property=\"og:description\" content=\"As someone who measures all kinds of things on the internet as part of his $DAYJOB, I can say with some authority that huge swaths of organizations are using cloud-services such as Google Apps, Dropbox and Office 365 as part of their business process workflows. For me, one regular component that touches the &#8220;cloud&#8221; is [&hellip;]\" \/>\n<meta property=\"og:url\" content=\"https:\/\/rud.is\/b\/2019\/01\/24\/quick-hit-automating-production-graphics-uploads-in-r-markdown-documents-with-googledrive\/\" \/>\n<meta property=\"og:site_name\" content=\"rud.is\" \/>\n<meta property=\"article:published_time\" content=\"2019-01-24T20:03:42+00:00\" \/>\n<meta property=\"article:modified_time\" content=\"2019-01-25T16:26:53+00:00\" \/>\n<meta property=\"og:image\" content=\"https:\/\/rud.is\/b\/wp-content\/uploads\/2019\/01\/gdrive-auto-upload.png\" \/>\n<meta name=\"author\" content=\"hrbrmstr\" \/>\n<meta name=\"twitter:card\" content=\"summary_large_image\" \/>\n<meta name=\"twitter:label1\" content=\"Written by\" \/>\n\t<meta name=\"twitter:data1\" content=\"hrbrmstr\" \/>\n\t<meta name=\"twitter:label2\" content=\"Est. reading time\" \/>\n\t<meta name=\"twitter:data2\" content=\"3 minutes\" \/>\n<script type=\"application\/ld+json\" class=\"yoast-schema-graph\">{\"@context\":\"https:\\\/\\\/schema.org\",\"@graph\":[{\"@type\":\"Article\",\"@id\":\"https:\\\/\\\/rud.is\\\/b\\\/2019\\\/01\\\/24\\\/quick-hit-automating-production-graphics-uploads-in-r-markdown-documents-with-googledrive\\\/#article\",\"isPartOf\":{\"@id\":\"https:\\\/\\\/rud.is\\\/b\\\/2019\\\/01\\\/24\\\/quick-hit-automating-production-graphics-uploads-in-r-markdown-documents-with-googledrive\\\/\"},\"author\":{\"name\":\"hrbrmstr\",\"@id\":\"https:\\\/\\\/rud.is\\\/b\\\/#\\\/schema\\\/person\\\/d7cb7487ab0527447f7fda5c423ff886\"},\"headline\":\"Quick Hit: Automating Production Graphics Uploads in R Markdown Documents with googledrive\",\"datePublished\":\"2019-01-24T20:03:42+00:00\",\"dateModified\":\"2019-01-25T16:26:53+00:00\",\"mainEntityOfPage\":{\"@id\":\"https:\\\/\\\/rud.is\\\/b\\\/2019\\\/01\\\/24\\\/quick-hit-automating-production-graphics-uploads-in-r-markdown-documents-with-googledrive\\\/\"},\"wordCount\":496,\"commentCount\":6,\"publisher\":{\"@id\":\"https:\\\/\\\/rud.is\\\/b\\\/#\\\/schema\\\/person\\\/d7cb7487ab0527447f7fda5c423ff886\"},\"image\":{\"@id\":\"https:\\\/\\\/rud.is\\\/b\\\/2019\\\/01\\\/24\\\/quick-hit-automating-production-graphics-uploads-in-r-markdown-documents-with-googledrive\\\/#primaryimage\"},\"thumbnailUrl\":\"https:\\\/\\\/rud.is\\\/b\\\/wp-content\\\/uploads\\\/2019\\\/01\\\/gdrive-auto-upload.png\",\"articleSection\":[\"R\"],\"inLanguage\":\"en-US\",\"potentialAction\":[{\"@type\":\"CommentAction\",\"name\":\"Comment\",\"target\":[\"https:\\\/\\\/rud.is\\\/b\\\/2019\\\/01\\\/24\\\/quick-hit-automating-production-graphics-uploads-in-r-markdown-documents-with-googledrive\\\/#respond\"]}]},{\"@type\":\"WebPage\",\"@id\":\"https:\\\/\\\/rud.is\\\/b\\\/2019\\\/01\\\/24\\\/quick-hit-automating-production-graphics-uploads-in-r-markdown-documents-with-googledrive\\\/\",\"url\":\"https:\\\/\\\/rud.is\\\/b\\\/2019\\\/01\\\/24\\\/quick-hit-automating-production-graphics-uploads-in-r-markdown-documents-with-googledrive\\\/\",\"name\":\"Quick Hit: Automating Production Graphics Uploads in R Markdown Documents with googledrive - 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